Package: zeitgebr 0.3.5
Quentin Geissmann
zeitgebr: Analysis of Circadian Behaviours
Use behavioural variables to compute period, rhythmicity and other circadian parameters. Methods include computation of chi square periodograms (Sokolove and Bushell (1978) <doi:10.1016/0022-5193(78)90022-X>), Lomb-Scargle periodograms (Lomb (1976) <doi:10.1007/BF00648343>, Scargle (1982) <doi:10.1086/160554>, Ruf (1999) <doi:10.1076/brhm.30.2.178.1422>), and autocorrelation-based periodograms.
Authors:
zeitgebr_0.3.5.tar.gz
zeitgebr_0.3.5.zip(r-4.5)zeitgebr_0.3.5.zip(r-4.4)zeitgebr_0.3.5.zip(r-4.3)
zeitgebr_0.3.5.tgz(r-4.4-any)zeitgebr_0.3.5.tgz(r-4.3-any)
zeitgebr_0.3.5.tar.gz(r-4.5-noble)zeitgebr_0.3.5.tar.gz(r-4.4-noble)
zeitgebr_0.3.5.tgz(r-4.4-emscripten)zeitgebr_0.3.5.tgz(r-4.3-emscripten)
zeitgebr.pdf |zeitgebr.html✨
zeitgebr/json (API)
| # Install 'zeitgebr' in R: |
| install.packages('zeitgebr', repos = c('https://rethomics.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rethomics/zeitgebr/issues
- dams_sample - A behavr table with approximately ten days of DAM2 recording for 32 fruit flies. The first 10, the following 11 and the last 11 animals have long, short and wild type period, respectively (see 'meta(dams_sample)').
Last updated 5 months agofrom:b8467d85ff. Checks:OK: 5 NOTE: 2. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Sep 06 2024 |
| R-4.5-win | NOTE | Sep 06 2024 |
| R-4.5-linux | NOTE | Sep 06 2024 |
| R-4.4-win | OK | Sep 06 2024 |
| R-4.4-mac | OK | Sep 06 2024 |
| R-4.3-win | OK | Sep 06 2024 |
| R-4.3-mac | OK | Sep 06 2024 |
Exports:ac_periodogramchi_sq_periodogramcwt_periodogramcwt_spectrogramfind_peaksfourier_periodogramls_periodogramperiodogramspectrogram
Dependencies:askpassbase64encbehavrbslibcachemclicolorspacecpp11crosstalkcurldata.tabledigestdplyrevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehighrhtmltoolshtmlwidgetshttrisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevallifecyclelombmagrittrMASSMatrixmemoisemgcvmimemunsellnlmeopensslpillarpkgconfigplotlypracmapromisespurrrR6rappdirsRColorBrewerRcpprlangrmarkdownsassscalesstringistringrsystibbletidyrtidyselecttinytexutf8vctrsviridisLiteWaveletCompwithrxfunyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Computes a spectrogram using CWT | cwt_spectrogram |
| A behavr table with approximately ten days of DAM2 recording for 32 fruit flies. The first 10, the following 11 and the last 11 animals have long, short and wild type period, respectively (see 'meta(dams_sample)'). | dams_sample |
| Find peaks in a periodogram | find_peaks |
| Computes periodograms | periodogram |
| Methods For Computing Periodograms | ac_periodogram chi_sq_periodogram cwt_periodogram fourier_periodogram ls_periodogram periodogram_methods |
| Computes spectrogram | spectrogram |
