Package: scopr 0.3.3
Quentin Geissmann
scopr: Read Ethoscope Data
Handling of behavioural data from the Ethoscope platform (Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) <doi:10.1371/journal.pbio.2003026>). Ethoscopes (<https://ethoscope.net>) are an open source/open hardware framework made of interconnected raspberry pis (<https://www.raspberrypi.org>) designed to quantify the behaviour of multiple small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables such as xy coordinates, dimensions and speed. This package is part of the rethomics framework <http://rethomics.github.io/>.
Authors:
scopr_0.3.3.tar.gz
scopr_0.3.3.zip(r-4.7-any)scopr_0.3.3.zip(r-4.6-any)scopr_0.3.3.zip(r-4.5-any)
scopr_0.3.3.tgz(r-4.6-any)scopr_0.3.3.tgz(r-4.5-any)
scopr_0.3.3.tar.gz(r-4.7-any)scopr_0.3.3.tar.gz(r-4.6-any)
scopr_0.3.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
scopr/json (API)
| # Install 'scopr' in R: |
| install.packages('scopr', repos = c('https://rethomics.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rethomics/scopr/issues
- no_region_id_metadata - Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.
- region_id_metadata - Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #'
biological-data-analysisparsing
Last updated from:284c56a6c8. Checks:7 WARNING, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | WARNING | 144 | ||
| source / vignettes | OK | 277 | ||
| linux-release | WARNING | 145 | ||
| macos-release | WARNING | 92 | ||
| macos-oldrel | WARNING | 90 | ||
| windows-devel | WARNING | 90 | ||
| windows-release | WARNING | 90 | ||
| windows-oldrel | WARNING | 87 | ||
| wasm-release | OK | 124 |
Exports:experiment_infolink_ethoscope_metadatalink_ethoscope_metadata_remotelist_result_filesload_ethoscopescopr_examplescopr_example_dir
Dependencies:behavrbitbit64blobcachemclicliprcpp11crayondata.tableDBIfastmapgluehmslifecyclemagrittrmemoisepillarpkgconfigprettyunitsprogressR6readrrlangRSQLitestringistringrtibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve information about an experiment | experiment_info |
| Link ethoscope metadata to the matching result files | link_ethoscope_metadata link_ethoscope_metadata_remote |
| List all available result files | list_result_files |
| Load data from ethoscope result files | load_ethoscope |
| Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example. | no_region_id_metadata |
| Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #' | region_id_metadata |
| Get path to scopr example | scopr_example scopr_example_dir |