Package: scopr 0.3.3
Quentin Geissmann
scopr: Read Ethoscope Data
Handling of behavioural data from the Ethoscope platform (Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) <doi:10.1371/journal.pbio.2003026>). Ethoscopes (<http://gilestrolab.github.io/ethoscope/>) are an open source/open hardware framework made of interconnected raspberry pis (<https://www.raspberrypi.org>) designed to quantify the behaviour of multiple small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables such as xy coordinates, dimensions and speed. This package is part of the rethomics framework <http://rethomics.github.io/>.
Authors:
scopr_0.3.3.tar.gz
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scopr.pdf |scopr.html✨
scopr/json (API)
| # Install 'scopr' in R: |
| install.packages('scopr', repos = c('https://rethomics.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rethomics/scopr/issues
- no_region_id_metadata - Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.
- region_id_metadata - Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #'
biological-data-analysisparsing
Last updated 3 years agofrom:c2c387ae3b. Checks:1 OK, 7 WARNING. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 28 2025 |
| R-4.5-win | WARNING | Feb 28 2025 |
| R-4.5-mac | WARNING | Feb 28 2025 |
| R-4.5-linux | WARNING | Feb 28 2025 |
| R-4.4-win | WARNING | Feb 28 2025 |
| R-4.4-mac | WARNING | Feb 28 2025 |
| R-4.3-win | WARNING | Feb 28 2025 |
| R-4.3-mac | WARNING | Feb 28 2025 |
Exports:experiment_infolink_ethoscope_metadatalink_ethoscope_metadata_remotelist_result_filesload_ethoscopescopr_examplescopr_example_dir
Dependencies:behavrbitbit64blobcachemclicliprcpp11crayondata.tableDBIfansifastmapgluehmslifecyclemagrittrmemoisepillarpkgconfigplogrprettyunitsprogressR6readrrlangRSQLitestringistringrtibbletidyselecttzdbutf8vctrsvroomwithr
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Retrieve information about an experiment | experiment_info |
| Link ethoscope metadata to the matching result files | link_ethoscope_metadata link_ethoscope_metadata_remote |
| List all available result files | list_result_files |
| Load data from ethoscope result files | load_ethoscope |
| Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example. | no_region_id_metadata |
| Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #' | region_id_metadata |
| Get path to scopr example | scopr_example scopr_example_dir |
