Package: scopr 0.3.3

Quentin Geissmann

scopr: Read Ethoscope Data

Handling of behavioural data from the Ethoscope platform (Geissmann, Garcia Rodriguez, Beckwith, French, Jamasb and Gilestro (2017) <doi:10.1371/journal.pbio.2003026>). Ethoscopes (<http://gilestrolab.github.io/ethoscope/>) are an open source/open hardware framework made of interconnected raspberry pis (<https://www.raspberrypi.org>) designed to quantify the behaviour of multiple small animals in a distributed and real-time fashion. The default tracking algorithm records primary variables such as xy coordinates, dimensions and speed. This package is part of the rethomics framework <http://rethomics.github.io/>.

Authors:Quentin Geissmann [aut, cre]

scopr_0.3.3.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
scopr/json (API)

# Install 'scopr' in R:

install.packages('scopr', repos = c('https://rethomics.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rethomics/scopr/issues

Datasets:

no_region_id_metadata - Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.
region_id_metadata - Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #'

On CRAN:

biological-data-analysis parsing

4.23 score 3 stars 56 scripts 315 downloads 1 mentions 7 exports 34 dependencies

Last updated from:3780cc5b97. Checks:7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	WARNING	157
source / vignettes	OK	215
linux-release-x86_64	WARNING	148
macos-release-arm64	WARNING	90
macos-oldrel-arm64	WARNING	113
windows-devel	WARNING	87
windows-release	WARNING	128
windows-oldrel	WARNING	93
wasm-release	OK	162

Exports:experiment_info link_ethoscope_metadata link_ethoscope_metadata_remote list_result_files load_ethoscope scopr_example scopr_example_dir

Dependencies:behavr bit bit64 blob cachem cli clipr cpp11 crayon data.table DBI fastmap glue hms lifecycle magrittr memoise pillar pkgconfig prettyunits progress R6 readr rlang RSQLite stringi stringr tibble tidyselect tzdb utf8 vctrs vroom withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Retrieve information about an experiment	experiment_info
Link ethoscope metadata to the matching result files	link_ethoscope_metadata link_ethoscope_metadata_remote
List all available result files	list_result_files
Load data from ethoscope result files	load_ethoscope
Simple toy metadata defining three experiments, with one condition ('test') per experiment. Implicitly, 20 individuals are in each experiment It serves as a simple example.	no_region_id_metadata
Simple toy metadata experimental conditions for 15 individuals in three experiments. the condition ('test') is linked to the experiments, and another condition ('treatment') is per individual. It serves as a simple example. #'	region_id_metadata
Get path to scopr example	scopr_example scopr_example_dir